Chapter Metrics

Chapter: Chapter number (leading zeros removed)
Name: Chapter title from index.md
Sections: Count of H2 and H3 headers in chapter markdown files
Diagrams: Count of H4 headers starting with '#### Diagram:'
Equations: LaTeX expressions using $ and $$ delimiters
Words: Word count across all markdown files in the chapter
Links: Markdown-formatted links [text](url)

Generated by: Book Metrics Python Program v0.05
Generated on: March 25, 2026 at 06:44 AM

This file contains chapter-by-chapter metrics for student-facing content.

Chapter	Name	Sections	Diagrams	Equations	Words	Links
1	Foundations of Molecular Biology	24	6	2	5,253	2
2	Biological Databases	29	1	0	4,878	1
3	Bioinformatics Data Formats	24	1	5	4,572	1
4	Graph Theory Fundamentals	42	3	111	5,076	4
5	Graph Databases and Query Languages	22	1	0	3,843	2
6	Sequence Alignment and Homology	28	3	45	4,257	5
7	Phylogenetics and Evolutionary Graphs	25	3	62	5,645	5
8	Structural Bioinformatics and Molecular Interactions	43	4	30	5,164	7
9	Protein-Protein Interaction Networks	31	4	42	5,083	7
10	Genome Assembly and Variation Graphs	36	3	40	4,773	6
11	Transcriptomics and Gene Regulatory Networks	36	5	44	4,872	8
12	Metabolic Pathway Modeling	16	4	39	4,069	8
13	Signaling Networks and Disease Modules	16	4	43	4,747	9
14	Biomedical Knowledge Graphs and Ontologies	3	0	0	206	4
15	Multi-Omics Integration and Graph Analytics	3	0	0	191	4
16	Python Tools and Capstone Projects	3	0	0	202	2

Metrics Explanation