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Interactive Mass Spectrometer MicroSim

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How to Use the Simulation

  1. Pick an element from the dropdown to load its known isotopes (Chlorine, Neon, Carbon, Magnesium).
  2. Press Play / Pause to control the stream of ions moving through the spectrometer schematic.
  3. Watch ions travel through the sample inlet, ionization region, acceleration plates, magnetic deflection zone, and finally to the detector. Lighter isotopes curve more sharply.
  4. Click any bar in the spectrum to highlight that isotope and display its exact mass and natural abundance.
  5. Connect the animation to the bar chart: note how the detector position aligns with each bar’s relative peak height.

Included Isotope Data

Element Isotope Mass (amu) Natural Abundance (%)
Chlorine 35Cl 34.96885 75.77
Chlorine 37Cl 36.96590 24.23
Neon 20Ne 19.99244 90.48
Neon 21Ne 20.99385 0.27
Neon 22Ne 21.99138 9.25
Carbon 12C 12.00000 98.93
Carbon 13C 13.00335 1.07
Magnesium 24Mg 23.98504 78.99
Magnesium 25Mg 24.98584 10.00
Magnesium 26Mg 25.98259 11.01

Lesson Integration Ideas

  • Claim-Evidence-Reasoning: Ask students to justify the average atomic mass printed on the periodic table using the simulated spectrum as evidence.
  • Prediction Challenge: Pause the ion beam, cover the chart, and have students sketch the expected deflection order for each isotope before revealing the bars.
  • Extension: Have students adjust textbook practice problems to use the isotope abundances shown here, then compare calculated weighted averages versus the simulation output.

Learning Objective Alignment

  • Bloom’s Analyze: Interpret the distribution of peak heights to determine isotopic composition.
  • Bloom’s Evaluate: Predict how changing the natural abundance of an isotope would alter both the detector hit pattern and the average atomic mass.