Taxonomy Distribution Report

Overview

• Total Concepts: 450
• Number of Taxonomies: 14
• Average Concepts per Taxonomy: 32.1

Distribution Summary

Category	TaxonomyID	Count	Percentage	Status
MAP	MAP	46	10.2%	✅
REG	REG	45	10.0%	✅
CLIN	CLIN	45	10.0%	✅
PED	PED	40	8.9%	✅
BIOINFO	BIOINFO	40	8.9%	✅
EXP	EXP	39	8.7%	✅
GVAR	GVAR	38	8.4%	✅
QUANT	QUANT	32	7.1%	✅
GSTR	GSTR	28	6.2%	✅
ETHICS	ETHICS	24	5.3%	✅
Foundation Concepts - Prerequisites	FOUND	22	4.9%	✅
POP	POP	21	4.7%	✅
FRONT	FRONT	20	4.4%	✅
PROB	PROB	10	2.2%	ℹ️ Under

Visual Distribution

MAP                       █████  46 ( 10.2%)
REG                       █████  45 ( 10.0%)
CLIN                      █████  45 ( 10.0%)
PED                       ████  40 (  8.9%)
BIOINFO                   ████  40 (  8.9%)
EXP                       ████  39 (  8.7%)
GVAR                      ████  38 (  8.4%)
QUANT                     ███  32 (  7.1%)
GSTR                      ███  28 (  6.2%)
ETHICS                    ██  24 (  5.3%)
Foundation Concepts - Pre ██  22 (  4.9%)
POP                       ██  21 (  4.7%)
FRONT                     ██  20 (  4.4%)
PROB                      █  10 (  2.2%)

Balance Analysis

✅ No Over-Represented Categories

All categories are under the 30% threshold. Good balance!

ℹ️ Under-Represented Categories (<3%)

• PROB (PROB): 10 concepts (2.2%)
• Note: Small categories are acceptable for specialized topics

Category Details

MAP (MAP)

Count: 46 concepts (10.2%)

Concepts:

• 1. Genetic Linkage
• 1. Recombination
• 1. Crossing Over
• 1. Recombination Frequency
• 1. Genetic Map
• 1. Map Distance
• 1. Centimorgan
• 1. Two-Point Cross
• 1. Three-Point Cross
• 1. Interference
• 1. Coefficient of Coincidence
• 1. Gene Order Determination
• 1. Genetic Markers
• 1. Molecular Markers
• 1. Restriction Fragment Length
• ...and 31 more

REG (REG)

Count: 45 concepts (10.0%)

Concepts:

• 1. Transcription Regulation
• 1. Promoter
• 1. TATA Box
• 1. Transcription Factor
• 1. General Transcription Factor
• 1. Specific Transcription Factor
• 1. Activator
• 1. Repressor
• 1. Enhancer
• 1. Silencer
• 1. Insulator
• 1. Cis-Regulatory Element
• 1. Trans-Acting Factor
• 1. Transcriptional Logic
• 1. Combinatorial Control
• ...and 30 more

CLIN (CLIN)

Count: 45 concepts (10.0%)

Concepts:

• 1. Mendelian Disease
• 1. Complex Disease
• 1. Genetic Counseling
• 1. Risk Assessment
• 1. Carrier Screening
• 1. Newborn Screening
• 1. Prenatal Genetic Testing
• 1. Preimplantation Diagnosis
• 1. Family History Assessment
• 1. Genetic Testing Types
• 1. Diagnostic Testing
• 1. Predictive Testing
• 1. Presymptomatic Testing
• 1. Drug Metabolism Variation
• 1. CYP450 Polymorphisms
• ...and 30 more

PED (PED)

Count: 40 concepts (8.9%)

Concepts:

• 1. Pedigree Analysis
• 1. Autosomal Dominant Pedigree
• 1. Autosomal Recessive Pedigree
• 1. X-Linked Inheritance
• 1. X-Linked Recessive Pedigree
• 1. X-Linked Dominant Pedigree
• 1. Carrier Probability
• 1. Penetrance
• 1. Incomplete Penetrance
• 1. Expressivity
• 1. Variable Expressivity
• 1. Phenocopy
• 1. Genetic Heterogeneity
• 1. Locus Heterogeneity
• 1. Allelic Heterogeneity
• ...and 25 more

BIOINFO (BIOINFO)

Count: 40 concepts (8.9%)

Concepts:

• 1. Genome Sequencing
• 1. Sanger Sequencing
• 1. Next-Gen Sequencing
• 1. Illumina Sequencing
• 1. Long-Read Sequencing
• 1. Whole Genome Sequencing
• 1. Whole Exome Sequencing
• 1. Targeted Sequencing
• 1. Sequence Alignment
• 1. BLAST Algorithm
• 1. Pairwise Alignment
• 1. Multiple Sequence Alignment
• 1. Genome Annotation
• 1. Gene Prediction
• 1. Variant Calling
• ...and 25 more

EXP (EXP)

Count: 39 concepts (8.7%)

Concepts:

• 1. Reverse Genetics
• 1. Mutagenesis Screen
• 1. Chemical Mutagenesis
• 1. EMS Mutagenesis
• 1. Insertional Mutagenesis
• 1. Saturation Mutagenesis
• 1. Enhancer Trap
• 1. Suppressor Screen
• 1. Modifier Screen
• 1. Genetic Mosaic Analysis
• 1. Clonal Analysis
• 1. Drosophila Genetics
• 1. Yeast Genetics
• 1. Mouse Genetics
• 1. C. Elegans Genetics
• ...and 24 more

GVAR (GVAR)

Count: 38 concepts (8.4%)

Concepts:

• 1. Genetic Variation
• 1. Single Nucleotide Polymorphism
• 1. Insertion Deletion Variant
• 1. Copy Number Variation
• 1. Structural Variation
• 1. Chromosomal Inversion
• 1. Chromosomal Translocation
• 1. Chromosomal Deletion
• 1. Chromosomal Duplication
• 1. Tandem Repeat
• 1. Short Tandem Repeat
• 1. Microsatellite
• 1. Minisatellite
• 1. Variable Number Tandem Repeat
• 1. Haplotype
• ...and 23 more

QUANT (QUANT)

Count: 32 concepts (7.1%)

Concepts:

• 1. Quantitative Trait
• 1. Continuous Variation
• 1. Polygenic Inheritance
• 1. Multifactorial Trait
• 1. Threshold Trait
• 1. Heritability
• 1. Broad Sense Heritability
• 1. Narrow Sense Heritability
• 1. Additive Genetic Variance
• 1. Dominance Variance
• 1. Epistatic Variance
• 1. Environmental Variance
• 1. Phenotypic Variance
• 1. Twin Studies
• 1. Monozygotic Twins
• ...and 17 more

GSTR (GSTR)

Count: 28 concepts (6.2%)

Concepts:

• 1. Chromosome Structure
• 1. Euchromatin
• 1. Heterochromatin
• 1. Constitutive Heterochromatin
• 1. Facultative Heterochromatin
• 1. Centromere Structure
• 1. Telomere Structure
• 1. Chromatin
• 1. Nucleosome
• 1. Histone Proteins
• 1. Histone Modifications
• 1. Histone Acetylation
• 1. Histone Methylation
• 1. Chromatin Remodeling
• 1. Epigenetics
• ...and 13 more

ETHICS (ETHICS)

Count: 24 concepts (5.3%)

Concepts:

• 1. Informed Consent
• 1. Genetic Privacy
• 1. Genetic Discrimination
• 1. GINA Legislation
• 1. Data Ownership
• 1. Biobank Ethics
• 1. Return of Results
• 1. Incidental Findings
• 1. Duty to Warn
• 1. Equity in Genomic Medicine
• 1. Health Disparities
• 1. Reference Genome Bias
• 1. Ancestry and Identity
• 1. Gene Editing Ethics
• 1. Germline Editing Debate
• ...and 9 more

Foundation Concepts - Prerequisites (FOUND)

Count: 22 concepts (4.9%)

Concepts:

• 1. Genetic Inference
• 1. Genome Organization
• 1. Linkage
• 1. Quantitative Genetics
• 1. Population Genetics
• 1. Gene Expression
• 1. Stem Cell Gene Expression
• 1. Forward Genetics
• 1. Model Organism
• 1. Functional Genomics
• 1. Genomics
• 1. Version Control in Genomics
• 1. Human Genetics
• 1. Pharmacogenomics
• 1. Genetic Ethics
• ...and 7 more

POP (POP)

Count: 21 concepts (4.7%)

Concepts:

• 1. Allele Frequency
• 1. Genotype Frequency
• 1. Hardy-Weinberg Equilibrium
• 1. Hardy-Weinberg Assumptions
• 1. Chi-Square HWE Test
• 1. Natural Selection
• 1. Fitness
• 1. Selection Coefficient
• 1. Directional Selection
• 1. Stabilizing Selection
• 1. Disruptive Selection
• 1. Balancing Selection
• 1. Heterozygote Advantage
• 1. Genetic Drift
• 1. Bottleneck Effect
• ...and 6 more

FRONT (FRONT)

Count: 20 concepts (4.4%)

Concepts:

• 1. CRISPR Advancements
• 1. CRISPR Therapeutics
• 1. In Vivo Gene Editing
• 1. Epigenome Editing
• 1. Single-Cell RNA Sequencing
• 1. Spatial Transcriptomics
• 1. Cell Atlas Projects
• 1. Machine Learning Variants
• 1. Large Language Models Bio
• 1. Protein Structure AI
• 1. Pangenome
• 1. Pangenome Reference
• 1. Structural Variant Calling
• 1. Telomere-to-Telomere
• 1. Microbiome Genetics
• ...and 5 more

PROB (PROB)

Count: 10 concepts (2.2%)

Concepts:

• 1. Probability in Genetics
• 1. Conditional Probability
• 1. Bayesian Reasoning
• 1. Prior Probability
• 1. Posterior Probability
• 1. Likelihood Ratio
• 1. Chi-Square Test
• 1. Goodness of Fit Test
• 1. Null Hypothesis in Genetics
• 1. P-Value Interpretation

Recommendations

• ✅ Excellent balance: Categories are evenly distributed (spread: 8.0%)
• ✅ MISC category minimal: Good categorization specificity

Educational Use Recommendations

• Use taxonomy categories for color-coding in graph visualizations
• Design curriculum modules based on taxonomy groupings
• Create filtered views for focused learning paths
• Use categories for assessment organization
• Enable navigation by topic area in interactive tools

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Report generated by learning-graph-reports/taxonomy_distribution.py